Intel® Clusters and HPC Technology

catastrophic error: cannot open source file "mpi.h"

Hi,

We have SGI altix cluster running SUSE SLES 11 sp 2.

Installed -  Intel_Cluster_Studio_2013.0.028  .

I try to compile the software "LAMMPS"  ang get the error :    "catastrophic error: cannot open source file "mpi.h"  "  for many files.

Any suggestions how to proceed ?

Thanks,

Ofir

 

 

MPI_Allreduce strange result

Hi users and developers,

I am having a stringe result come from MPI_Allreduce subroutine in fortran. Here is the thing:

ALLOCATE(mesh%idx%lxyz_inv(nr(1, 1):nr(2, 1), nr(1, 2):nr(2, 2), nr(1, 3):nr(2, 3)))
mesh%idx%lxyz_inv(:,:,:) = 0
!In a subroutine, An array was first allocated and initialized. nr(1, ?):nr(2, ?) are all -36:36 for the test run
!...
!...
npoints = product(nr(2, 1:3) - nr(1, 1:3) + 1)
call MPI_Allreduce(MPI_IN_PLACE, mesh%idx%lxyz_inv(nr(1, 1), nr(1, 2), nr(1, 3)), npoints, MPI_INTEGER, MPI_BOR, mpi_world%comm, mpi_err)

mpirun error "APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1)"

Hello, i am using intel mpirun (version = for Linux* OS, Version 4.0 Update 3 Build 20110824) to run a program that i have compiled in our cluster. We use PBS queue system (version = PBSPro_11.1.0.111761).

When I use

$ mpirun -n 8 -machinefile $PBS_NODEFILE -verbose /home/a.c.padilha/bin/vasp.teste.O0.debug.x 

I end up getting these error messages:

Uninstall Problem

Hi

I have installed Intel Cluster Studio XE 2013 but now I have added a new HDD and want to install it on it. The problem I am facing is when I try to uninstall Intel Cluster Studio XE 2013 from my first HDD it says another installer is running, complete it before running this installer. I have no other installers running. I tried many times and I get the same error.

Thanks and Regards

Jayanth D

wmpiexec and command line prompts and process priority?

Hi All, 

I have a program that prompts for user input from the master process and works fine using mpiexec. However, I don't see an option in the Intel version of wmpiexec that executes a command window so that user input can be obtained.  I know the mpich version of wmpiexec allows this option, but I don't see it in the Intel version.  It's no big deal, as I can just run mpiexec from a command window to start.

MPI - core assignment/core utilization/process manager difficulties

I am having troubles running my Fortran MPI program on a cluster using  PBSPro_11.3.0.121723.

When i execut my script (select information shown here)

#PBS -l select=1:ncpus=8

mpirun -n 8 -env I_MPI_DEBUG 5 ./xhpl_intel64

The scheduler allocates 8 cores for my program however if i ssh into the node and use top i can see that 4 mpiprocesses gets a core each and the last 4 processes shares a core. Thus providing very bad performance.

The wierd thing is that when using the Intel MPI library 4.0.0.028 runtime version this does not happen.

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