Job not running

Job not running

Аватар пользователя fitzroy
fitzroy
ср, 04/01/2012 - 08:36
Hello, I am having a problem running a job. I get an 'o' file, which provides details such as user, ncpus, etc. But I do not get any results from my program. My program sorts a file and writes the results to another text file. Any idea why it is not running?

Below is the "qstat -Q" result.



Job id Name User Time Use S Queue ---------------- ---------------- ---------------- -------- - ------ 33118.acaad01 /home/fitzSort finem1 00:00:00 F workq
Thanks for your help
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Пожалуйста, обратитесь к странице Уведомление об оптимизации для более подробной информации относительно производительности и оптимизации в программных продуктах компании Intel.
Аватар пользователя Mike Pearce (Intel)
Mike Pearce (Intel)
ср, 04/01/2012 - 09:16

Suggest you run $ tracejob .

As far as I can tellyou aretrying to run a jobname: /home/fitzSort (which of course is invalid)

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Аватар пользователя fitzroy
fitzroy
ср, 04/01/2012 - 10:52

Thanks. I changed the name, but I still did not get any results. Below is the file I am using: #!/bin/sh #PBS -l select=1:ncpus=8 -N fitzSort env LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${CNC_INSTALL_DIR}/lib/intel64\ /home/finem1/sort/pSort/DNA_SORT



Please let me know if there is any error. Thanks

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Аватар пользователя Mike Pearce (Intel)
Mike Pearce (Intel)
ср, 04/01/2012 - 11:29
Best Reply

The script looks fine - I suspect that the batch job failure has something to do with the environment/library path.

Can you run this program (locally on acano01), with the sameenv that you've set up on this batch script, i.e. where is CNC_INSTALL_DIR defined?

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Аватар пользователя fitzroy
fitzroy
ср, 04/01/2012 - 16:07

Thanks. The slash at the end of the path was not needed.

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