Data files sizes

Data files sizes

Solving this problem I found out that the relative size of reference and sequence file may be important in estimation of algorithm speed. There are three essential cases:

1) reference file is much larger than sequence files in total
2) sequence files together are larger than reference file
3) we could assume that reference file ~ total sequence files

could you tell me on which of these cases should I rely?

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Assumlng the test files we have, I would say that the 3 cases must be considered.

I'm not sure we've seen the third one, with both sequences big.

Can admins please confirm there will be such cases?

All these cases may be used in our benchmarks ;)

Can you guarantee there will be tests of the third type?
Optimization for this case is much harder then for the first two, and will take a lot of time. It would be very disapointing, if there would be no such tests.

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