DSS Distributed Symmetric Matrix Storage

Developer Reference for Intel® oneAPI Math Kernel Library for Fortran

Download PDF

ID 766686

Date 12/16/2022

Version

Public

A newer version of this document is available. Customers should click here to go to the newest version.

Visible to Intel only — GUID: GUID-DFA68E6B-2507-4AEA-A0E7-32972A8B6704

View Details

DSS Distributed Symmetric Matrix Storage

The distributed assembled matrix input format can be used by the Parallel Direct Sparse Solver for Clusters Interface.

In this format, the symmetric input matrix A is divided into sequential row subsets, or domains. Each domain belongs to an MPI process. Neighboring domains can overlap. For such intersection between two domains, the element values of the full matrix can be obtained by summing the respective elements of both domains.

As in the centralized format, the distributed format uses three arrays to describe the input data, but the values, columns, and rowIndex arrays on each processor only describe the domain belonging to that particular processor and not the entire matrix.

For example, consider a symmetric matrix A:

This array could be distributed between two domains corresponding to two MPI processes, with the first containing rows 1 through 3, and the second containing rows 3 through 5.

NOTE:

For the symmetric input matrix, it is not necessary to store the values from the lower triangle.

Distributed Storage Arrays for a Symmetric Matrix, Domain 1
one-based indexing
`values`	=	(6	-1	-3	5	3	2)
`columns`	=	(1	2	4	2	3	5)
`rowIndex`	=	(1	4	5	7)
zero-based indexing
`values`	=	(6	-1	-3	5	3	2)
`columns`	=	(0	1	3	1	2	4)
`rowIndex`	=	(0	3	4	6)

Distributed Storage Arrays for a Symmetric Matrix, Domain 2
one-based indexing
`values`	=	(8	5	2	10	5)
`columns`	=	(3	4	5	4	5)
`rowIndex`	=	(1	4	5	6)
zero-based indexing
`values`	=	(8	5	2	10	5)
`columns`	=	(2	3	4	3	4)
`rowIndex`	=	(0	3	4	5)

The third row of matrix A is common between domain 1 and domain 2. The values of row 3 of matrix A are the sums of the respective elements of row 3 of matrix A_Domain1 and row 1 of matrix A_Domain2.

Storage Format Restrictions

The storage format for the sparse solver must conform to two important restrictions:

the non-zero values in a given row must be placed into the values array in the order in which they occur in the row (from left to right);
no diagonal element can be omitted from the values array for any symmetric or structurally symmetric matrix.

The second restriction implies that if symmetric or structurally symmetric matrices have zero diagonal elements, then they must be explicitly represented in the values array.

Product and Performance Information
Performance varies by use, configuration and other factors. Learn more at www.Intel.com/PerformanceIndex. Notice revision #20201201

Product and Performance Information

Performance varies by use, configuration and other factors. Learn more at www.Intel.com/PerformanceIndex.

Notice revision #20201201

Parent topic: Sparse Matrix Storage Formats

Select Your Language

Using Intel.com Search

Quick Links

Recent Searches

Advanced Search

Only search in

Developer Reference for Intel® oneAPI Math Kernel Library for Fortran

DSS Distributed Symmetric Matrix Storage

Storage Format Restrictions